Hello,
EMBOSS 6.2.0 bundles zlib, expat and pcre. In the previous version, I got help from a fellow packager to patch the pcre out, but that patch no longer works. Thus, I'd like to ask for help in solving this problem, which is unfortunately beyond my skills. Ideally, I'd gladly accept a co-maintainer for this bioinformatics suite. I have built the package with bundled libs for devel for the time being, so that potential helpers have access to the latest spec file.
Regards, Julian
Hi Julian,
I think you should first confirm if the bundled zlib,?expat?and?pcre was heavily changed compared to the system-wide libs. If they are heavily changed, you maybe need use bundled version. otherwise it must be patched to avoid using bundled libs.
在2010-02-25?04:28:33,"Julian?Sikorski"?belegdol@gmail.com?写道:
Hello,
EMBOSS?6.2.0?bundles?zlib,?expat?and?pcre.?In?the?previous?version,?I got?help?from?a?fellow?packager?to?patch?the?pcre?out,?but?that?patch?no longer?works.?Thus,?I'd?like?to?ask?for?help?in?solving?this?problem, which?is?unfortunately?beyond?my?skills. Ideally,?I'd?gladly?accept?a?co-maintainer?for?this?bioinformatics?suite. I?have?built?the?package?with?bundled?libs?for?devel?for?the?time?being, so?that?potential?helpers?have?access?to?the?latest?spec?file.
Regards, Julian
--? devel?mailing?list devel@lists.fedoraproject.org https://admin.fedoraproject.org/mailman/listinfo/devel
Hi Julian, The emboss seems also bundled a copy of plplot which already in fedora. You can first del bundled stuffs and then modify Makefile.am and configure,in to remove those stuffs . Finally you need to type aclocal -I m4 autoconf automake -a 在2010-02-25 12:18:08,"Chen Lei" supercyper@163.com 写道:
Hi Julian,
I think you should first confirm if the bundled zlib,?expat?and?pcre was heavily changed compared to the system-wide libs. If they are heavily changed, you maybe need use bundled version. otherwise it must be patched to avoid using bundled libs.
在2010-02-25?04:28:33,"Julian?Sikorski"?belegdol@gmail.com?写道:
Hello,
EMBOSS?6.2.0?bundles?zlib,?expat?and?pcre.?In?the?previous?version,?I got?help?from?a?fellow?packager?to?patch?the?pcre?out,?but?that?patch?no longer?works.?Thus,?I'd?like?to?ask?for?help?in?solving?this?problem, which?is?unfortunately?beyond?my?skills. Ideally,?I'd?gladly?accept?a?co-maintainer?for?this?bioinformatics?suite. I?have?built?the?package?with?bundled?libs?for?devel?for?the?time?being, so?that?potential?helpers?have?access?to?the?latest?spec?file.
Regards, Julian
--? devel?mailing?list devel@lists.fedoraproject.org https://admin.fedoraproject.org/mailman/listinfo/devel
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Hi Chen,
I tried having a look, but I'm not sure how to check that exactly. I tried diffing the sources against the upstream source, but it's hard for me to tell anything. The diffs are attached. In case the uncompressed diffs don't get through moderation, here are the compressed ones.
Julian
W dniu 25.02.2010 19:10, Chen Lei pisze:
Hi Julian, The emboss seems also bundled a copy of plplot http://koji.fedoraproject.org/koji/packageinfo?packageID=3493 which already in fedora. You can first del bundled stuffs and then modify Makefile.am and configure,in to remove those stuffs . Finally you need to type aclocal -I m4 autoconf automake -a ��2010-02-25 12:18:08��"Chen Lei" supercyper@163.com ������
Hi Julian, I think you should first confirm if the bundled zlib, expat and pcre was heavily changed compared to the system-wide libs. If they are heavily changed, you maybe need use bundled version. otherwise it must be patched to avoid using bundled libs. ��2010-02-25 04:28:33��"Julian Sikorski" <belegdol@gmail.com <mailto:belegdol@gmail.com>> ������ >Hello, > >EMBOSS 6.2.0 bundles zlib, expat and pcre. In the previous version, I >got help from a fellow packager to patch the pcre out, but that patch no >longer works. Thus, I'd like to ask for help in solving this problem, >which is unfortunately beyond my skills. >Ideally, I'd gladly accept a co-maintainer for this bioinformatics suite. >I have built the package with bundled libs for devel for the time being, >so that potential helpers have access to the latest spec file. > >Regards, >Julian > >-- >devel mailing list >devel@lists.fedoraproject.org <mailto:devel@lists.fedoraproject.org> >https://admin.fedoraproject.org/mailman/listinfo/devel ���� ����������������URL���������� ------------------------------------------------------------------------ ��������������������URL������ http://popme.163.com/netease/mail/footer163.HTM ������������������ * *Connection Failed �������� * ������������������ / (110) Connection timed out/ The remote host or network may be down. Please try the request again. ���������������������������������������������������� ��������������������webmaster <mailto:webmaster?subject=CacheErrorInfo%20-%20ERR_CONNECT_FAIL&body=CacheHost%3A%20cache.163.com%0D%0AErrPage%3A%20ERR_CONNECT_FAIL%0D%0AErr%3A%20(110)%20Connection%20timed%20out%0D%0ATimeStamp%3A%20Thu,%2025%20Feb%202010%2004%3A17%3A59%20GMT%0D%0A%0D%0AClientIP%3A%20220.181.13.190%0D%0AServerIP%3A%20220.181.75.142%0D%0A%0D%0AHTTP%20Request%3A%0D%0AGET%20%2Fnetease%2Fmail%2Ffooter163.HTM%20HTTP%2F1.1%0AHost%3A%20popme.163.com%0D%0AAccept-Encoding%3A%20identity%0D%0A%0D%0A%0D%0A> ------------------------------------------------------------------------ Generated Thu, 25 Feb 2010 04:17:59 GMT by cache.163.com (squid/3.0.STABLE23)
I'll take a look of those patches day^_^
在2010-02-27?08:00:50,"Julian?Sikorski"?belegdol@gmail.com?写道:
Hi?Chen,
I?tried?having?a?look,?but?I'm?not?sure?how?to?check?that?exactly.?I tried?diffing?the?sources?against?the?upstream?source,?but?it's?hard?for me?to?tell?anything.?The?diffs?are?attached. In?case?the?uncompressed?diffs?don't?get?through?moderation,?here?are the?compressed?ones.
Julian
W dniu 24.02.2010 21:28, Julian Sikorski pisze:
Hello,
EMBOSS 6.2.0 bundles zlib, expat and pcre. In the previous version, I got help from a fellow packager to patch the pcre out, but that patch no longer works. Thus, I'd like to ask for help in solving this problem, which is unfortunately beyond my skills. Ideally, I'd gladly accept a co-maintainer for this bioinformatics suite. I have built the package with bundled libs for devel for the time being, so that potential helpers have access to the latest spec file.
Regards, Julian
I think the time has come I should stop deluding myself I would ever be able to fix these issues by myself. I am thus orphaning the package, it turned out to be a much bigger task than I expected. Sorry. I hope it will be able to find a more skilled and appropriate maintainer. I have released the ownership in pkgdb.
Regards, Julian
devel@lists.stg.fedoraproject.org