Hello devel,
The NeuroFedora SIG is working to create a Comp-Neuro Fedora Labs https://labs.fedoraproject.org/ live image/installer. We would also like group our packages into an easier-to-install format for our target audience, which may include researchers who are new to Fedora.
To this end we would like to respectfully request the addition of two new groups in Comps.XML https://fedoraproject.org/wiki/How_to_use_and_edit_comps.xml_for_package_groups.
The first group would be "neuro-simulators" which would include several simulation packages as mandatory installs and a dozen or so python packages as default installs.
The second group would be "comp-neuro-tools" and would include many of the packages found on the Neuro-SIG group's page on src.fp.o https://src.fedoraproject.org/group/neuro-sig as well as the software being packaged on the NeuroFedora pagure https://pagure.io/neuro-sig/NeuroFedora/issues.
More information on the Comp-Neuro Lab image and NeuroFedora in general:
*
comps group discussion:https://pagure.io/neuro-sig/NeuroFedora/issue/198
*
NeuroFedora team:https://pagure.io/group/neuro-sig
*
NeuroFedora documentation:https://neuro.fedoraproject.org https://neuro.fedoraproject.org/
*
NeuroFedora blog:https://neuroblog.fedoraproject.org https://neuroblog.fedoraproject.org/
*
NeuroFedora packages:https://src.fedoraproject.org/group/neuro-sig
*
The logo/stickers etc for NeuroFedora were created by the Fedora design team and reside here:https://pagure.io/neuro-sig/NeuroFedora/blob/master/f/Artwork
*
We've already presented NeuroFedora to the neuroscience community at this year's annual conference, CNS*2019:https://www.cnsorg.org/cns-2019-quick. Our poster is here:https://pagure.io/neuro-sig/2019-NeuroFedora-poster-CNS/blob/master/f/2019-C...
-- Danny Lee dreamer@panix.com I have been impressed with the urgency of doing. Knowing is not enough; we must apply. Being willing is not enough; we must do. ~ Leonardo da Vinci
On Fri, Aug 23, 2019 22:28:48 -0400, Danny Lee wrote:
Hello devel,
Hi Danny,
Thanks for working on this!
The NeuroFedora SIG is working to create a Comp-Neuro Fedora Labs live image/ installer. We would also like group our packages into an easier-to-install format for our target audience, which may include researchers who are new to Fedora.
To this end we would like to respectfully request the addition of two new groups in Comps.XML.
The first group would be "neuro-simulators" which would include several simulation packages as mandatory installs and a dozen or so python packages as default installs.
The second group would be "comp-neuro-tools" and would include many of the packages found on the Neuro-SIG group's page on src.fp.o as well as the software being packaged on the NeuroFedora pagure.
Based on the feedback we receive here, we can open a PR against comps and discuss the changes in the review there next.
Hello,
Just an FYI: The PR to add a new group for computational modelling software was merged: https://pagure.io/fedora-comps/pull-request/410
Thanks Kevin :)
One can now install the group using DNF:
`sudo dnf groupinstall --with-optional "Neuron Modelling Simulators" --skip-broken`
This will pull in some commonly used modelling/simulation tools: - COPASI - bionetgen - calcium-calculator - genesis - moose - neurord - python3-PyLEMS - python3-brian2 - python3-nest - python3-neuron - python3-nineml - smoldyn
devel@lists.stg.fedoraproject.org