Medical-sig March 2020

medical-sig@lists.stg.fedorahosted.org

2 participants
5 discussions

Fedora Medical page renewal
by Jun Aruga 11 May '20

11 May '20

Hello, Fedora Medical SIG people. I am updating the SIG wiki page like this. https://fedoraproject.org/wiki/SIGs/Medical Some sections was moved here that is linked from the above SIG wiki page. https://fedoraproject.org/wiki/Medical/Memo Now I am migrating the issue data from Trac to Pagure fedora-medical issues page manually one by one from ticket id: 1. The number of total Trac tickets is 34. Old URL on Trac is redirected to the new page on the Pagure. https://fedorahosted.org/fedora-medical/ticket/1 => https://pagure.io/fedora-medical/issue/1 If you have opinions for the format for the new issue page: https://pagure.io/fedora-medical/issue/1 or something, please let me know. Cheers, Jun -- Jun | He - His - Him

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bowtie2
by Jun Aruga 08 May '20

08 May '20

Hi, I just share I am working on bowtie2 [1] packaging here [2] as a trial. Because I have seen Debian Med(ical) team is using the mailing list to share the package status, rather than a kind of issue page like Pagure. Right now it succeeded to build the bowtie2 RPM package on Fedora rawhide x86_64. As bowtie2 non-x86-64 packages needs simde [3] to build, I will do the packaging too. [1] https://github.com/BenLangmead/bowtie2 [2] https://github.com/junaruga/fedora-bowtie2 [3] https://github.com/nemequ/simde -- Jun | He - His - Him

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Asking to create "medical-sig" FAS/Kochei group
by Jun Aruga 14 Mar '20

14 Mar '20

Just for your information. I am asking to create "medical-sig" group (FAS/Kochei) and "biology" (only Kochei) group here. https://pagure.io/fedora-infrastructure/issue/8751 I believe that this makes us easier to manage our packages. Stay healthy and safe, everyone. Cheers, Jun -- Jun | He - His - Him

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Adding Medical SIG package group and including bio-tech, biology
by Jun Aruga 01 Mar '20

01 Mar '20

Hi, There are 3 topics for the Fedora Medical SIG in this email. ## Creating RPM group: medical-sig I would like to add "medical-sig" to the RPM groups that is listed on the page below. https://koschei.fedoraproject.org/groups Someone do you know how to create the group? ## Including bio-tech to Medical SIG Seeing the SIG's wiki page, right now Medical SIG is for Doctor/Dentist's healthcare system specific. https://fedoraproject.org/wiki/SIGs/FedoraMedical I want to update the Medical SIG's wiki page including bio-tech, biology content. In my opinion, a challenge for the medical, biology communities is the sustainability. Each medical and bio package maintainer in Fedora tends to manage their RPM packages in individual level. I want to make the Medical SIG the inclusive place the place to communicate and work collaboratively for the RPM packages. A good role model for the concept of Medical SIG is Debian Med team. https://wiki.debian.org/DebianMed > The Debian Med project prepares packages that are associated with medicine, pre-clinical research, and life sciences. Its developments are mostly focused on three areas for the moment: medical practice, imaging and bioinformatics. I want to adapt the concept to Fedora Medical SIG. https://blends.debian.org/med/tasks/ Biology is the sub category of the Medical in the Debian Med project. Well, for example working for creating a yogurt that has a strength for the disease sequencing the yogurt bacteria genome is not medical. But aligning with Debian Medical project is still meaningful for me. Any thoughts? ## Promotion! If you are interested in Medical/Biology, please join us to Medical SIG! It's a very moderate traffic group right now. https://lists.fedoraproject.org/archives/list/medical-sig@lists.fedorahoste… => Manage subscription Mailing list address: medical-sig(a)lists.fedorahosted.org Cheers, Jun -- Jun | He - His - Him

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Adding Medical packages to wiki page
by Jun Aruga 01 Mar '20

01 Mar '20

Hello Medical Sig, Seeing below Debian Med group, I thought I wanted to know the list of medical packages on Fedora Project. https://blends.debian.org/med/tasks/ How do you think of adding the list to our wiki page like a Debian Med Group's page? It looks convenient, isn't it? I am interested in especially Biology (bioinformatics) packages such as biopython, BioConductor and etc. Jun

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Medical-sig March 2020