Medical-sig May 2020

medical-sig@lists.stg.fedorahosted.org

1 participants
4 discussions

FYI: Bio RPM Collections COVID-19
by Jun Aruga 22 May '20

22 May '20

FYI. I recently started the following project. I will package RPMs for the software used in the project. Bio RPM Collections COVID-19 https://github.com/junaruga/bio-rpm-collections-covid19 This project is to enable the RPM based nf-core pipelines for COVID-19 analysis on multiple CPU architectures. Cheers, Jun -- Jun | He - His - Him

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bwa: non-x86_64 builds
by Jun Aruga 22 May '20

22 May '20

Hi, I want to ask you to review this pull-request. This PR enables non-x86_64 builds. https://src.fedoraproject.org/rpms/bwa/pull-request/3 https://bugzilla.redhat.com/show_bug.cgi?id=1839203 It comes from the following upstream pull-request. travis: added arm64, ppc64le and s390x tests with simde https://github.com/lh3/bwa/pull/283 I also sent the same kind of PR to minimap2 for the RPM preparation, as a reference. If you have something to enable non-x86_64 builds, you can refer this way. travis: added ppc64le and s390x test. https://github.com/lh3/minimap2/pull/607 Cheers, Jun -- Jun | He - His - Him

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Fedora Medical page renewal
by Jun Aruga 11 May '20

11 May '20

Hello, Fedora Medical SIG people. I am updating the SIG wiki page like this. https://fedoraproject.org/wiki/SIGs/Medical Some sections was moved here that is linked from the above SIG wiki page. https://fedoraproject.org/wiki/Medical/Memo Now I am migrating the issue data from Trac to Pagure fedora-medical issues page manually one by one from ticket id: 1. The number of total Trac tickets is 34. Old URL on Trac is redirected to the new page on the Pagure. https://fedorahosted.org/fedora-medical/ticket/1 => https://pagure.io/fedora-medical/issue/1 If you have opinions for the format for the new issue page: https://pagure.io/fedora-medical/issue/1 or something, please let me know. Cheers, Jun -- Jun | He - His - Him

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bowtie2
by Jun Aruga 08 May '20

08 May '20

Hi, I just share I am working on bowtie2 [1] packaging here [2] as a trial. Because I have seen Debian Med(ical) team is using the mailing list to share the package status, rather than a kind of issue page like Pagure. Right now it succeeded to build the bowtie2 RPM package on Fedora rawhide x86_64. As bowtie2 non-x86-64 packages needs simde [3] to build, I will do the packaging too. [1] https://github.com/BenLangmead/bowtie2 [2] https://github.com/junaruga/fedora-bowtie2 [3] https://github.com/nemequ/simde -- Jun | He - His - Him

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Medical-sig May 2020