Medical-sig

medical-sig@lists.stg.fedorahosted.org

129 discussions

Re: Medical SIG at Fedora Council Video Meeting
by Jun Aruga 07 Jan '22

07 Jan '22

On Thu, Jan 6, 2022 at 9:14 PM Tom Callaway <spotrh(a)gmail.com> wrote: > > Hi! If you're getting this email, it is because you're listed as SIG members on the Fedora Wiki. > > (In looking at the Medical SIG page, it was not clear who might be the right people to poke, so I sent this to you. Please forward as needed) > > The Fedora Council would like to invite your SIG to present at an upcoming Fedora Council video meeting. If you're interested, what we'd be looking for from you is: > > Someone to present (on camera in a virtual meeting room) a 10-15 minute presentation (with slides) on the state of your SIG (past, present, future) along with any calls to action that you might have. > Stick around for 15+ minutes for Q&A discussion > > These meetings are recorded and then shared on youtube: https://www.youtube.com/channel/UCnIfca4LPFVn8-FjpPVc1ow > > A small FAQ: > > Q. When are these meetings held? > A. The video meetings are held monthly, on a Thursday, between 1800 - 1900 UTC. > > Q. Do we have to do this? > A. No. It is an opportunity we're making available to you, but if you don't want to (or cannot), feel free to decline (or ignore this email). > > Q. Would the meeting be all about our SIG? > A. We also use some time to discuss council business, but you'd be the guest(s) of honor. > > Q. Okay, we're in. How do I sign-up? > A. You reply to this email and say "Our SIG would love to do this!" and I'll get you scheduled. > > Q. I have other questions, who can I ask? > A. You can ask me! You now have my email, or you can find me any of the other obvious places I have presence on the internet and ask me there. > > Thanks, > Tom "spot" Callaway, on behalf of the Fedora Council Hello Tom, Yes, maybe I am one of the right people about this topic. I added the Fedora Medical SIG mailing list email to CC. I am happy to volunteer to attend the meeting and do a presentation, unless someone would take this. Medical SIG people, I think this meeting is an interesting opportunity to meet online for each other. :-) -- Jun | He - Him

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【贡】123拔苗助长,影视在线观看厚德载物
by ki279696 ki279696 13 Dec '21

13 Dec '21

123影视在线观看 --》点击后面地址进入看午@夜大片: http://paenve722.aa234.cc/#fedoraproject1211 --》点击后面地址进入看午@夜视频: http://paenve722.aa234.cc/#fedoraproject1211 123影视在线观看作为中国青年，我们有幸能够生活在这样一个伟大的全球一体化高度发达的时代。我们会继承历史的经验，运用“一带一路”、“人类命运共同体”等先进的思路方法，和全世界的青年人携起手来，共同创造更加先进、更加幸福、更加和谐的“同一个世界”！为人类的未来，做出自己应有的贡献。希望大家都能认同这一现实，一起携手，共创未来！　　“还有，长廊椅子上，这么多件衣服没人要，东一件，西一件，你们不觉得可惜，我觉得可惜啊！”她不管我们是在听还是没听，还继续说。【贡】123拔苗助长,影视在线观看厚德载物奶奶嘴里不停的叨念着：“路终于修好了，路终于修好了……”我抬头时，只见两行热泪从奶奶的脸上滚落下来。我知道奶奶又在想爷爷了，我曾经不止一次地听奶奶讲起二十年前的那段往事，每次讲起，奶奶都会老泪纵横。那是二十年前的一个漆黑的雨夜，爷爷突然的了重病，当时村子里唯一一样现代化的交通工具就是一台拖拉机，而通往城里的又是一条坑洼不平的土路。这条路是晴天一身土雨天一身泥，天又下着大雨。当人们开着拖拉机把重病的爷爷送到医院时，已经太晚了，爷爷已经停止了呼吸，医生遗憾的告诉奶奶，如果能够早几分钟送来就好了……从那以后奶奶就有了一个心愿，盼望着早一天把通往城里的公路修好，使村里的乡亲们不要再有这种遗憾。123影视在线观看

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FYI: Bio RPM Collections COVID-19
by Jun Aruga 22 May '20

22 May '20

FYI. I recently started the following project. I will package RPMs for the software used in the project. Bio RPM Collections COVID-19 https://github.com/junaruga/bio-rpm-collections-covid19 This project is to enable the RPM based nf-core pipelines for COVID-19 analysis on multiple CPU architectures. Cheers, Jun -- Jun | He - His - Him

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bwa: non-x86_64 builds
by Jun Aruga 22 May '20

22 May '20

Hi, I want to ask you to review this pull-request. This PR enables non-x86_64 builds. https://src.fedoraproject.org/rpms/bwa/pull-request/3 https://bugzilla.redhat.com/show_bug.cgi?id=1839203 It comes from the following upstream pull-request. travis: added arm64, ppc64le and s390x tests with simde https://github.com/lh3/bwa/pull/283 I also sent the same kind of PR to minimap2 for the RPM preparation, as a reference. If you have something to enable non-x86_64 builds, you can refer this way. travis: added ppc64le and s390x test. https://github.com/lh3/minimap2/pull/607 Cheers, Jun -- Jun | He - His - Him

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Fedora Medical page renewal
by Jun Aruga 11 May '20

11 May '20

Hello, Fedora Medical SIG people. I am updating the SIG wiki page like this. https://fedoraproject.org/wiki/SIGs/Medical Some sections was moved here that is linked from the above SIG wiki page. https://fedoraproject.org/wiki/Medical/Memo Now I am migrating the issue data from Trac to Pagure fedora-medical issues page manually one by one from ticket id: 1. The number of total Trac tickets is 34. Old URL on Trac is redirected to the new page on the Pagure. https://fedorahosted.org/fedora-medical/ticket/1 => https://pagure.io/fedora-medical/issue/1 If you have opinions for the format for the new issue page: https://pagure.io/fedora-medical/issue/1 or something, please let me know. Cheers, Jun -- Jun | He - His - Him

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bowtie2
by Jun Aruga 08 May '20

08 May '20

Hi, I just share I am working on bowtie2 [1] packaging here [2] as a trial. Because I have seen Debian Med(ical) team is using the mailing list to share the package status, rather than a kind of issue page like Pagure. Right now it succeeded to build the bowtie2 RPM package on Fedora rawhide x86_64. As bowtie2 non-x86-64 packages needs simde [3] to build, I will do the packaging too. [1] https://github.com/BenLangmead/bowtie2 [2] https://github.com/junaruga/fedora-bowtie2 [3] https://github.com/nemequ/simde -- Jun | He - His - Him

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FYI: The simde movement
by Jun Aruga 21 Apr '20

21 Apr '20

Just for you information. Recently I was able to ship simde (SIMD Everywhere) RPM to Fedora [1], and am going to be shipped to EPEL too. It was the same timing with the Debian package's shipping.[2] The simde movement is very active in recent months. * simde-devel in Fedora * libsimde-dev in Debian It's a very powerful and portable software to make x86_64 only packages run on multiple CPU architectures. Here is a good example to adapt it. It's not hard to implement it. Yesterday there was a pull-request for minimap2 using SIMD. https://github.com/lh3/minimap2/pull/597 I would like to see SIMDe to be used more fo the SIMD implemented software. [1] https://src.fedoraproject.org/rpms/simde/ [2] https://wiki.debian.org/SIMDEverywhere -- Jun | He - His - Him

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RPM packages included in Medical and Biology category in Fedora?
by Jun Aruga 06 Apr '20

06 Apr '20

I created lists of RPM packages in Medical and Biology using Koschei's group tag feature. The medical-sig tag is for medical, healthcare, biology, computing biology, bioinformatics. The biology tag is for biology, computing biology, bioinformatics, genomics. Could you tell me any other packages you know, included in the lists [1] and [2]? * Koschei tip 1: On the list page, you can switch the list by [Show untracked] / [Hide untracked] toggle button. * Koschei tip 2: To enable tracking the package on Koschei, click a gear button on the "Scheduler parameters" on the page such as [3] if you have the permission. [1] and [2] are linked from Fedora Medical SIG page [4]. Thanks. [1] https://koschei.fedoraproject.org/groups/medical-sig?untracked=1 [2] https://koschei.fedoraproject.org/groups/biology?untracked=1 [3] https://koschei.fedoraproject.org/package/bowtie [4] https://fedoraproject.org/wiki/SIGs/Medical -- Jun | He - His - Him

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Asking to create "medical-sig" FAS/Kochei group
by Jun Aruga 14 Mar '20

14 Mar '20

Just for your information. I am asking to create "medical-sig" group (FAS/Kochei) and "biology" (only Kochei) group here. https://pagure.io/fedora-infrastructure/issue/8751 I believe that this makes us easier to manage our packages. Stay healthy and safe, everyone. Cheers, Jun -- Jun | He - His - Him

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Adding Medical SIG package group and including bio-tech, biology
by Jun Aruga 01 Mar '20

01 Mar '20

Hi, There are 3 topics for the Fedora Medical SIG in this email. ## Creating RPM group: medical-sig I would like to add "medical-sig" to the RPM groups that is listed on the page below. https://koschei.fedoraproject.org/groups Someone do you know how to create the group? ## Including bio-tech to Medical SIG Seeing the SIG's wiki page, right now Medical SIG is for Doctor/Dentist's healthcare system specific. https://fedoraproject.org/wiki/SIGs/FedoraMedical I want to update the Medical SIG's wiki page including bio-tech, biology content. In my opinion, a challenge for the medical, biology communities is the sustainability. Each medical and bio package maintainer in Fedora tends to manage their RPM packages in individual level. I want to make the Medical SIG the inclusive place the place to communicate and work collaboratively for the RPM packages. A good role model for the concept of Medical SIG is Debian Med team. https://wiki.debian.org/DebianMed > The Debian Med project prepares packages that are associated with medicine, pre-clinical research, and life sciences. Its developments are mostly focused on three areas for the moment: medical practice, imaging and bioinformatics. I want to adapt the concept to Fedora Medical SIG. https://blends.debian.org/med/tasks/ Biology is the sub category of the Medical in the Debian Med project. Well, for example working for creating a yogurt that has a strength for the disease sequencing the yogurt bacteria genome is not medical. But aligning with Debian Medical project is still meaningful for me. Any thoughts? ## Promotion! If you are interested in Medical/Biology, please join us to Medical SIG! It's a very moderate traffic group right now. https://lists.fedoraproject.org/archives/list/medical-sig@lists.fedorahoste… => Manage subscription Mailing list address: medical-sig(a)lists.fedorahosted.org Cheers, Jun -- Jun | He - His - Him

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