scitech May 2014

scitech@lists.fedoraproject.org

4 participants
5 discussions

Re: [Scitech] Updating to sagemath 6.2
by Paulo César Pereira de Andrade 30 May '14

30 May '14

2014-05-22 12:32 GMT-03:00 Paul Howarth <paul(a)city-fan.org>: > On 17/05/14 17:39, Paulo César Pereira de Andrade wrote: >> >> 2014-05-16 21:23 GMT-03:00 Paul Howarth <paul(a)city-fan.org>: >>> >>> On Fri, 16 May 2014 12:37:19 -0300 >>> Paulo César Pereira de Andrade >>> <paulo.cesar.pereira.de.andrade(a)gmail.com> wrote: >>> >>>> Hi sorry for adding the CC, but trying hard to get you attention :-) >>>> >>>> 2014-05-15 16:50 GMT-03:00 Paulo César Pereira de Andrade >>>> <paulo.cesar.pereira.de.andrade(a)gmail.com>: >>>>> >>>>> I am in the last steps on getting sagemath 6.2 working, so, >>>>> what should be done: >>>> >>>> >>>> It would be better to coordinate the update, so... >>>> >>>>> o Update to pari 2.7.0 -- optional >>>> >>>> >>>> At least for sagemath it is ok to rebuild pari 2.7.0; I will use >>>> this patch: >>>> >>>> https://abf.rosalinux.ru/openmandriva/sagemath/blob/master/sagemath-pari2.7… >>>> and drop this: >>>> >>>> http://pkgs.fedoraproject.org/cgit/sagemath.git/tree/sagemath-nopari2.6.pat… >>> >>> >>> Note that dist-git now has pari 2.7.1 but it's not built yet; that will >>> change when the mass rebuild lands. >> >> >> For sagemath I can apply the patches to support pari 2.7 later, but >> it probably would be better to build pari earlier. At least sagemath >> is already broken for almost a month in rawhide due to other >> dependencies. >> >> Can you rebuild pari in the next few days please? This would also >> ensure that the mass rebuild would not let pass broken packages >> in case it builds packages that needs pari before pari itself. > > > I've now built pari 2.7.1 in Rawhide. I kept the old library around for now > to avoid broken deps whilst packages are migrated to the new version. Many thanks! Major issue now for sagemath is ipython, that I hope should be resolved and available soon. > Paul. >

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Re: [Scitech] Updating to sagemath 6.2
by Paulo César Pereira de Andrade 19 May '14

19 May '14

2014-05-19 9:46 GMT-03:00 Rex Dieter <rdieter(a)fedoraproject.org>: > On 05/16/2014 10:37 AM, Paulo César Pereira de Andrade wrote: >>> >>> o Update to singular 3.1.6 -- should be easy rdieter has or had it almost >>> ready >> >> I can leave it for Jerry or Rex, or, I can do it, no problems. >> > > I worked on it a bit last night, I think I got it building as long as I used > --disable-polymake > > If that's acceptable, for now, I can commit later today. I already did it in my last commit, as it is required to bootstrap again polymake. -%bcond_without polymake +%bcond_with polymake I think major difference from your spec after the merge I did was to still install normaliz.lib over the one from Singular-3.1.6, but that due to the header of the file, that says the one in the tarball is for normaliz 2.7, and the one in %{SOURCE1} says it is for normaliz 2.8 or 2.9. > -- rex Thanks, Paulo

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Re: [Scitech] Updating to sagemath 6.2
by Paulo César Pereira de Andrade 19 May '14

19 May '14

2014-05-19 3:05 GMT-03:00 Thomas Spura <tomspur(a)fedoraproject.org>: > On Sun, May 18, 2014 at 11:30 PM, Paulo César Pereira de Andrade > <paulo.cesar.pereira.de.andrade(a)gmail.com> wrote: >> 2014-05-16 13:04 GMT-03:00 Jerry James <loganjerry(a)gmail.com>: >>> On Fri, May 16, 2014 at 9:37 AM, Paulo César Pereira de Andrade >>> <paulo.cesar.pereira.de.andrade(a)gmail.com> wrote: >>>> >>>> Hi sorry for adding the CC, but trying hard to get you attention :-) >>> >>> >>> No problem. I saw the first email, but didn't think there was anything for >>> me to do. >>> >>>> >>>> > o Update to singular 3.1.6 -- should be easy rdieter has or had it >>>> > almost ready >>>> >>>> I can leave it for Jerry or Rex, or, I can do it, no problems. >>> >>> >>> I haven't really been involved in the discussion between you two about this >>> update, so I think it would be better done by one of you. >> >> I tried to merge as best as possible the singular 3.1.6 from >> https://bugzilla.redhat.com/show_bug.cgi?id=1074590 and the >> latest git changes. >> >> Basically: >> o still copy over normaliz.lib (because the comments say >> it is for normaliz 2.8+ and the one in Singular-3.1.6 says it is for >> normalize 2.7) >> o rediff Singular-arches.patch; now there is arml and arm6 support >> what caused some noise, and apparently is upstream support to >> run on raspberry pi (armv6) >> o Disable polymake to allow bootstrapping again. >> >> If you have any comments please let me know, otherwise I should >> build it in the next few days. > > Do you MUST have ipython 1.2.1? It does not work with 0.13.2. Do not remember now the stack trace, but I know it does not work... So I just updated (in OpenMandriva) to the same as the one bundled in the sagemath tarball, and it appears to work correctly: https://abf.rosalinux.ru/build_lists/1865336 > As I have currently major troubles with unbundling everything from the > notebook, I asked for a temporal unbundling exception at [1] (Don't > know how long that'll take to proceed...) > > All python dependencies are currently done, just several js stuff is > pending and I don't expect to have e.g. codemirror in Fedora any > soon... > > Sorry for the bad news :) > > Greetings, > Tom > > [1] https://fedorahosted.org/fpc/ticket/416

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Updating to sagemath 6.2
by Paulo César Pereira de Andrade 18 May '14

18 May '14

I am in the last steps on getting sagemath 6.2 working, so, what should be done: o Update to pari 2.7.0 -- optional o Update to pynac 0.3.2 -- easy (I am comaintainer) o Update to singular 3.1.6 -- should be easy rdieter has or had it almost ready o Update to ipython 1.2.1 -- exactly this version mandatory Should temporarily switch to pre built documentation, because I could not manage to patch it to build with a sphinx other than 1.1.2. Major issue should be ipython, that must be updated to exactly 1.2.1, or major issues may arise (bundling was not allowed) and there is already ipython 2.x and ipython 3.x "advertised". Thanks, Paulo

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Re: [Scitech] Updating to sagemath 6.2
by Paulo César Pereira de Andrade 17 May '14

17 May '14

2014-05-16 21:23 GMT-03:00 Paul Howarth <paul(a)city-fan.org>: > On Fri, 16 May 2014 12:37:19 -0300 > Paulo César Pereira de Andrade > <paulo.cesar.pereira.de.andrade(a)gmail.com> wrote: > >> Hi sorry for adding the CC, but trying hard to get you attention :-) >> >> 2014-05-15 16:50 GMT-03:00 Paulo César Pereira de Andrade >> <paulo.cesar.pereira.de.andrade(a)gmail.com>: >> > I am in the last steps on getting sagemath 6.2 working, so, >> > what should be done: >> >> It would be better to coordinate the update, so... >> >> > o Update to pari 2.7.0 -- optional >> >> At least for sagemath it is ok to rebuild pari 2.7.0; I will use >> this patch: >> https://abf.rosalinux.ru/openmandriva/sagemath/blob/master/sagemath-pari2.7… >> and drop this: >> http://pkgs.fedoraproject.org/cgit/sagemath.git/tree/sagemath-nopari2.6.pat… > > Note that dist-git now has pari 2.7.1 but it's not built yet; that will > change when the mass rebuild lands. For sagemath I can apply the patches to support pari 2.7 later, but it probably would be better to build pari earlier. At least sagemath is already broken for almost a month in rawhide due to other dependencies. Can you rebuild pari in the next few days please? This would also ensure that the mass rebuild would not let pass broken packages in case it builds packages that needs pari before pari itself. > Paul. Thanks, Paulo

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scitech May 2014