March 2020 - Neurofedora - Fedora mailing-lists

Open NeuroFedora Meeting: 1600 UTC on Tuesday, 24th March
by Ankur Sinha 24 Mar '20

24 Mar '20

Hello everyone, You are invited to attend the next Open NeuroFedora team meeting this week on Tuesday at 1600UTC in #fedora-neuro on IRC (Freenode): https://webchat.freenode.net/?channels=#fedora-neuro The channel is bridged to Telegram, so you can also join us there on the @NeuroFedora group: https://t.me/NeuroFedora You can convert the meeting time to your local time using this command in a terminal: $ date --date='TZ="UTC" 1600 next Tue' or using this link: https://www.timeanddate.com/worldclock/fixedtime.html?msg=NeuroFedora+Meeti… The meeting will be chaired by @ankursinha. The agenda for the meeting is: - Introductions and roll call. - Tasks from last week's meeting: https://meetbot.fedoraproject.org/teams/neurofedora/neurofedora.2020-02-25-… - Open Pagure tickets: https://pagure.io/neuro-sig/NeuroFedora/issues?status=Open&tags=S%3A+Next+m… - Neuroscience query of the week. - Next meeting day, and chair. - Open floor. We hope to see you there! -- Thanks, Regards, Ankur Sinha "FranciscoD" (He / Him / His) | https://fedoraproject.org/wiki/User:Ankursinha Time zone: Europe/London

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NEURON updated to 7.7.2: test cases added, testing needed
by Ankur Sinha 22 Mar '20

22 Mar '20

Hello! We just updated NEURON to the latest version. While pushing the update, I also wrote two simple test cases for the package, one for NEURON, and the other for NEURON's python bindings. If any one would like to learn a bit about NEURON, the test cases are an excellent start. They basically ask you to go through the beginner's tutorial. Do give them a go and let me know what you think. If they aren't clear enough, for example, please let me know so I can improve them. https://bodhi.fedoraproject.org/updates/?packages=neuron General information on testing packages can be found here: https://fedoraproject.org/wiki/QA:Updates_Testing As we update more packages, the idea is to write simple test case for them all. This helps everyone (neuro and non neuro contributors) test packages while learning a little about the tools too. As always, if there are any queries, please use any of our channels to get in touch with us. -- Thanks, Regards, Ankur Sinha "FranciscoD" (He / Him / His) | https://fedoraproject.org/wiki/User:Ankursinha Time zone: Europe/London

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Re: accessing installed packages
by Ankur Sinha 21 Mar '20

21 Mar '20

On Sat, Mar 21, 2020 19:00:28 +0000, Moe Alkhawashki (PGR) wrote: > Hello, Hello! > I built a linux OS on my computer using your computational neuroscience > insallation media with fedora 31. > > I couldn't find any of the software that's supposed to be bundled with > it anywhere in the OS graphical interface. I thought there might have > been a mistake so I attempted to install the software manually but the > terminal kept saying that the software was already installed. > > Am I not seeing something? How do I access the installed software? My > only experience with linux was with ubuntu an debian and it's > relatively limited so excuse this question if it's simple. No, you're not missing anything. :) It depends on the software really. Some modelling tools aren't graphical at all. Instead they are libraries that you use. As an example, if you wanted to use NEST, you write your simulation in Python as shown in their documentation[1]. You can use a Python IDE like PyCharm to do the programming, but NEST itself does not have a graphical interface. (I think one is being developed, though.) Neuron is similar. It does have a UI, but not to write the actual simulation bits. One can now use Python for Neuron also[2]. For other tools that aren't shown in the graphical list, you may need to run them using the terminal. Their individual documentations will tell you what the "executable" to be run is. Does that make sense? If you can tell us what specific tool you want to work with, we'll be able to provide more specific documentation. [1] https://nest-simulator.readthedocs.io/en/latest/examples/index.html [2] https://www.neuron.yale.edu/neuron/static/py_doc/index.html -- Thanks, Regards, Ankur Sinha "FranciscoD" (He / Him / His) | https://fedoraproject.org/wiki/User:Ankursinha Time zone: Europe/London

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accessing installed packages
by Moe Alkhawashki (PGR) 21 Mar '20

21 Mar '20

Hello, I built a linux OS on my computer using your computational neuroscience insallation media with fedora 31. I couldn't find any of the software that's supposed to be bundled with it anywhere in the OS graphical interface. I thought there might have been a mistake so I attempted to install the software manually but the terminal kept saying that the software was already installed. Am I not seeing something? How do I access the installed software? My only experience with linux was with ubuntu an debian and it's relatively limited so excuse this question if it's simple. Thank you!

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Open NeuroFedora Meeting: 1600 UTC on Tuesday, 10th March
by Ankur Sinha 17 Mar '20

17 Mar '20

Hello everyone, You are invited to attend the next Open NeuroFedora team meeting this week on Tuesday at 1600UTC in #fedora-neuro on IRC (Freenode): https://webchat.freenode.net/?channels=#fedora-neuro The channel is bridged to Telegram, so you can also join us there on the @NeuroFedora group: https://t.me/NeuroFedora You can convert the meeting time to your local time using this command in a terminal: $ date --date='TZ="UTC" 1600 next Tue' or using this link: https://www.timeanddate.com/worldclock/fixedtime.html?msg=NeuroFedora+Meeti… The meeting will be chaired by @ankursinha. The agenda for the meeting is: - Introductions and roll call. - Tasks from last week's meeting: https://meetbot.fedoraproject.org/teams/neurofedora/neurofedora.2020-02-25-… - Open Pagure tickets: https://pagure.io/neuro-sig/NeuroFedora/issues?status=Open&tags=S%3A+Next+m… - Neuroscience query of the week. - Next meeting day, and chair. - Open floor. We hope to see you there! -- Thanks, Regards, Ankur Sinha "FranciscoD" (He / Him / His) | https://fedoraproject.org/wiki/User:Ankursinha Time zone: Europe/London

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Re: [NeuroFedora-bugs] Need a substitute for Tuesday's meeting
by Ankur Sinha 07 Mar '20

07 Mar '20

On Fri, Mar 06, 2020 19:44:57 -0500, Danny Lee wrote: > Hi all, my apologies but this afternoon I got notified that I have an > upcoming interview on Tuesday at 11 AM (same time as our meeting). Is there > somebody else that could fill in to run the meeting? Sorry about the late > notice! Sure, no worries. I'll chair it. All the best for your interview! PS: replying to the neurofedora ML (neuro-sig@.. is the one for bug notifications) -- Thanks, Regards, Ankur Sinha "FranciscoD" (He / Him / His) | https://fedoraproject.org/wiki/User:Ankursinha Time zone: Europe/London

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[releng/failed-composes] Issue #1013: Fedora-Rawhide-20200218.n.0 FINISHED_INCOMPLETE
by Danny Lee 06 Mar '20

06 Mar '20

Failed compose. - [41588033](https://koji.fedoraproject.org/koji/taskinfo?taskID=41588033) Live media log:https://kojipkgs.fedoraproject.org//work/tasks/8092/41588092/livemedia-… error: 2020-02-18 08:42:41,890 INFO pylorax: Non interactive installation failed: 2020-02-18 08:42:41,890 INFO pylorax: Problem: conflicting requests 2020-02-18 08:42:41,890 INFO pylorax: - nothing provides libcgns.so.3.4 needed by paraview-5.6.0-14.fc32.i686 2020-02-18 08:42:41,890 INFO pylorax: - nothing provides libcgns.so.3.4()(64bit) needed by paraview-5.6.0-14.fc32.x86_64. 2020-02-18 08:42:41,890 INFO pylorax: Root log:https://kojipkgs.fedoraproject.org//work/tasks/8092/41588092/root.log DEBUG util.py:596: 2020-02-18 08:42:41,890: Non interactive installation failed: DEBUG util.py:596: 2020-02-18 08:42:41,890: Problem: conflicting requests DEBUG util.py:596: 2020-02-18 08:42:41,890: - nothing provides libcgns.so.3.4 needed by paraview-5.6.0-14.fc32.i686 DEBUG util.py:596: 2020-02-18 08:42:41,890: - nothing provides libcgns.so.3.4()(64bit) needed by paraview-5.6.0-14.fc32.x86_64. DEBUG util.py:596: 2020-02-18 08:42:41,890: -- Danny Lee <dreamer(a)panix.com> I have been impressed with the urgency of doing. Knowing is not enough; we must apply. Being willing is not enough; we must do. ~ Leonardo da Vinci

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Information for the next blog post (due 2020-02-28)
by Ankur Sinha 03 Mar '20

03 Mar '20

Hello, What needs to go into the next blog post? - our FTBFS updates, (me) - updates in packages, (me) - compose info, (me) - FOSDEM bits, (major), @major, please send me your bit when its ready. Everyone: if there's anything else that needs to go in, please reply to this thread to let me know before Friday so that I can publish on Monday. We're looking for a new Marketing/Social media manager, so I'll write a different post for that. -- Thanks, Regards, Ankur Sinha "FranciscoD" (He / Him / His) | https://fedoraproject.org/wiki/User:Ankursinha Time zone: Europe/London

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NeuroFedora badge is live
by Ankur Sinha 03 Mar '20

03 Mar '20

Hello! Just a note that the NeuroFedora badge is now live at: https://badges.fedoraproject.org/badge/neurofedora-sig-member Everyone in the FAS group should receive it when the next infra run occurs. Since the FAS group is limited to package maintainers, I'll also figure out how we can also give it manually to all the great people who are doing the non packaging tasks. In the meantime, please retweet etc: https://twitter.com/sanjay_ankur/status/1234949809636810753?s=20 I'll add this to the next blog post, which I will *hopefully* get down to before the end of the work week. -- Thanks, Regards, Ankur Sinha "FranciscoD" (He / Him / His) | https://fedoraproject.org/wiki/User:Ankursinha Time zone: Europe/London

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Fwd: [releng/failed-composes] Issue #1066: Fedora-Rawhide-20200301.n.0 DOOMED
by Danny Lee 02 Mar '20

02 Mar '20

Failed compose: https://koji.fedoraproject.org/koji/taskinfo?taskID=42062814 Issue: https://pagure.io/releng/failed-composes/issue/1066 I checked the livemedia-out.log and found: 2020-03-01 10:05:48,180 INFO pylorax: Installing. 2020-03-01 10:05:48,181 INFO pylorax: Starting package installation process 2020-03-01 10:05:48,181 INFO pylorax: 2020-03-01 10:05:48,181 INFO pylorax: The installation was stopped due to an error which occurred while running in non-interactive cmdline mode. Since there cannot be any questions in cmdline mode, edit your kickstart file and retry installation. 2020-03-01 10:05:48,181 INFO pylorax: The exact error message is: 2020-03-01 10:05:48,181 INFO pylorax: 2020-03-01 10:05:48,181 INFO pylorax: Non interactive installation failed: 2020-03-01 10:05:48,181 INFO pylorax: Problem: conflicting requests 2020-03-01 10:05:48,182 INFO pylorax: - package gnome-classic-session-3.35.92-1.fc33.noarch requires gnome-shell-extension-window-list = 3.35.92-1.fc33, but none of the providers can be installed 2020-03-01 10:05:48,182 INFO pylorax: - package gnome-shell-extension-window-list-3.35.92-1.fc33.noarch requires gnome-shell-extension-common = 3.35.92-1.fc33, but none of the providers can be installed 2020-03-01 10:05:48,182 INFO pylorax: - nothing provides gnome-shell >= 3.35.92 needed by gnome-shell-extension-common-3.35.92-1.fc33.noarch. 2020-03-01 10:05:48,182 INFO pylorax: 2020-03-01 10:05:48,182 INFO pylorax: The installer will now terminate. I received this email also, so it seems like a more widespread error than just the Comp_Neuro compose. -------- Forwarded Message -------- Subject: [releng/failed-composes] Issue #1066: Fedora-Rawhide-20200301.n.0 DOOMED Date: Sun, 1 Mar 2020 19:36:48 +0000 (UTC) From: Kevin Fenzi <pagure(a)pagure.io> Reply-To: reply+0e844a9a33a76dc51db83fb855d03b3ca3ca818aeb501f2c7c78dfe272276102e457c0026815d1b303d4bec0c772c9adfbdf9a856108fce72d0511787ef39bab(a)pagure.io To: dreamer(a)panix.com kevin added a new comment to an issue you are following: `` This is due to: ``` 10:06:17,012 WRN packaging: Problem: conflicting requests - package gnome-classic-session-3.35.92-1.fc33.noarch requires gnome-shell-extension-window-list = 3.35.92-1.fc33, but none of the providers can be installed - package gnome-shell-extension-window-list-3.35.92-1.fc33.noarch requires gnome-shell-extension-common = 3.35.92-1.fc33, but none of the providers can be installed - nothing provides gnome-shell >= 3.35.92 needed by gnome-shell-extension-common-3.35.92-1.fc33.noarch 10:09:17,236 DBG dnf: User-Agent: constructed: 'libdnf (Fedora 33; generic; Linux.x86_64)' ``` Looks like gnome-shell-3.35.92 hasn't been built yet? @kalev @fmuellner `` To reply, visit the link below or just reply to this email https://pagure.io/releng/failed-composes/issue/1066

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Neurofedora March 2020