March 2021 - Neurofedora - Fedora mailing-lists

Feedback required for NeuroFedora abstract submission to the INCF Neuroinformatics Assembly (slightly urgent)
by Ankur Sinha 29 Mar '21

29 Mar '21

Hi folks, (Sent to neurofedora(a)lists.fp.o, neuro-sig(a)lists.fp.o, and neuro-sig-members) Sorry, I've left this rather late: the deadline for submission is the 31st! We're submitting an abstract to the INCF Neuroinformatics Assembly, since it's quite a major conference around tools and standards in neuroscience, and our presence here will hopefully get us more users and contributors: https://neuroinformatics.incf.org/ Could you please look at the abstract draft here and give your comments? https://pagure.io/neuro-sig/NeuroFedora/issue/427#comment-723858 As usual, *everyone* who has contributed to NeuroFedora in *any* capacity, packaging or otherwise, since our last submission (in May 2020 to OCNS) will be listed as an author. We've collected an initial list of names on the ticket. Please add your name if we've missed you there (and of course, please let us know if you don't want your name on the submission too). Thanks again for all your hard work to keep NeuroFedora going. If there's every anything we can do to help and improve, please do start a discussion here on the list. -- Thanks, Regards, Ankur Sinha "FranciscoD" (He / Him / His) | https://fedoraproject.org/wiki/User:Ankursinha Time zone: Europe/London

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Logs from the Open NeuroFedora Meeting: 1400 UTC on Monday, 29th March
by Ankur Sinha 29 Mar '21

29 Mar '21

Hi everyone, Please find the logs from today's meeting below. The next meeting will occur in 2 weeks time on the 12th of April. ======================================= #fedora-neuro: NeuroFedora - 2021-03-29 ======================================= Meeting started by FranciscoD at 14:06:52 UTC. The full logs are available at https://meetbot.fedoraproject.org/fedora-neuro/2021-03-29/neurofedora.2021-… Meeting summary --------------- * Agenda (FranciscoD, 14:08:01) * LINK: https://neuroblog.fedoraproject.org/2021/03/29/next-open-neurofedora-meetin… (FranciscoD, 14:08:05) * New introductions and roll call (FranciscoD, 14:08:32) * Tasks from last week's meeting (FranciscoD, 14:08:38) * Open Pagure tickets (FranciscoD, 14:08:45) * Open bugs check (FranciscoD, 14:08:59) * Open package reviews check (FranciscoD, 14:09:06) * Koschei packages check (FranciscoD, 14:09:14) * CompNeuro lab compose status check for F34/F35 (FranciscoD, 14:09:21) * Neuroscience query of the week (FranciscoD, 14:09:27) * Next meeting day, and chair (FranciscoD, 14:09:33) * Open floor (FranciscoD, 14:09:37) * New introductions and roll call (FranciscoD, 14:11:09) * ankursinha (Ankur Sinha), FranciscoD, BST (UTC+1), NeuroFedora + Fedora Join + other Fedora bits (FranciscoD, 14:12:10) * nerdsville, omnidapps, UTC+7, NeuroFedora, elections, jenkins/infra, etc (omnidapps, 14:12:39) * major, MeWjOr, +5:30, NeuroFedora, Packaging and fun :D (MeWjOr, 14:12:44) * Tasks from last week's meeting (FranciscoD, 14:16:53) * Minutes from last meeting: https://meetbot.fedoraproject.org/teams/neurofedora/neurofedora.2021-03-15-… (FranciscoD, 14:17:06) * ACTION: FranciscoD update template to remove "week's" from the topic (FranciscoD, 14:17:19) * FranciscoD repackage bluepyopt per https://bugzilla.redhat.com/show_bug.cgi?id=1849706: PENDING (FranciscoD, 14:17:38) * ACTION: FranciscoD repackage bluepyopt per https://bugzilla.redhat.com/show_bug.cgi?id=1849706 (FranciscoD, 14:17:52) * MeWjOr Fix deps for snakemake and proceed with the review: WIP (FranciscoD, 14:19:35) * ACTION: MeWjOr file issue upstream, skip tests in spec and continue with snakemake package (FranciscoD, 14:20:04) * omnidapps to send out meeting logs: DONE (FranciscoD, 14:20:46) * omnidapps send out logs to mailing lists: DONE (FranciscoD, 14:20:52) * FranciscoD to chair next meeting: DONE (FranciscoD, 14:21:00) * Open Pagure tickets (FranciscoD, 14:21:28) * Pending tickets are here: https://pagure.io/neuro-sig/NeuroFedora/issues?status=Open&tags=S%3A+Next+m… (FranciscoD, 14:21:37) * Issue #427: Presence at the INCF neuroinformatics assembly: https://pagure.io/neuro-sig/NeuroFedora/issue/427 (FranciscoD, 14:21:56) * ACTION: FranciscoD send around abstrat for INCF submission before end of today (FranciscoD, 14:22:41) * LINK: https://apps.fedoraproject.org/datagrepper/ (FranciscoD, 14:26:01) * ACTION: FranciscoD mail ML asking all contributors to please comment on the ticket so we can add them as co-authors (FranciscoD, 14:26:54) * ACTION: MeWjOr generate a list of contributors since our last abstract submission to CNS (FranciscoD, 14:27:13) * if you want to be aware of every IRC meeting (that uses zodbot), subscribe to the meetingminutes mailing list (FranciscoD, 14:28:57) * Issue #421: Use pluto instead of venus for planets? https://pagure.io/neuro-sig/NeuroFedora/issue/421: WIP (FranciscoD, 14:30:24) * Open bugs check (FranciscoD, 14:31:42) * Please see all NeuroFedora bugs here: https://tinyurl.com/neurofedora-bugs (FranciscoD, 14:31:54) * ACTION: FranciscoD fix elephant in F33 (FranciscoD, 14:35:02) * ACTION: Everyone: please take up bugs and work on them if you have time to spare (FranciscoD, 14:39:37) * Please add yourself to the author list in issue #427 (FranciscoD, 14:43:16) * Open package reviews check (FranciscoD, 14:44:20) * Please see the bugs this tracker bug depends on: https://bugzilla.redhat.com/show_bug.cgi?id=fedora-neuro (FranciscoD, 14:45:29) * All reviews are assigned, so in progress. No reviews waiting for reviewers to take up (FranciscoD, 14:46:03) * Koschei packages check (FranciscoD, 14:46:17) * Skipping since the package list on Koschei is still incomplete (https://pagure.io/fedora-infrastructure/issue/9664) (FranciscoD, 14:46:41) * Neuroscience query of the week (FranciscoD, 14:49:44) * Please put anything of interest on to our reading list here: https://pagure.io/neuro-sig/NeuroFedora/issue/318 (FranciscoD, 14:50:08) * iztokf[m] had shared this one: The carbon impact of artificial intelligence | Nature Machine Intelligence: https://www.nature.com/articles/s42256-020-0219-9 (FranciscoD, 14:50:29) * Next meeting day, and chair (FranciscoD, 14:52:47) * Next meeting in 2 weeks on 12th April at 1300 UTC (FranciscoD, 14:53:58) * bt0 will chair! (FranciscoD, 14:54:02) * ACTION: FranciscoD send out logs to list (FranciscoD, 14:54:12) * Open Floor (FranciscoD, 14:54:45) * NeuroFedora talk at Open Neuroscience World Wide Neuro series: https://www.world-wide.org/Open-Source/ (FranciscoD, 14:56:23) Meeting ended at 15:00:22 UTC. Action Items ------------ * FranciscoD update template to remove "week's" from the topic * FranciscoD repackage bluepyopt per https://bugzilla.redhat.com/show_bug.cgi?id=1849706 * MeWjOr file issue upstream, skip tests in spec and continue with snakemake package * FranciscoD send around abstrat for INCF submission before end of today * FranciscoD mail ML asking all contributors to please comment on the ticket so we can add them as co-authors * MeWjOr generate a list of contributors since our last abstract submission to CNS * FranciscoD fix elephant in F33 * Everyone: please take up bugs and work on them if you have time to spare * FranciscoD send out logs to list Action Items, by person ----------------------- * FranciscoD * FranciscoD update template to remove "week's" from the topic * FranciscoD repackage bluepyopt per https://bugzilla.redhat.com/show_bug.cgi?id=1849706 * FranciscoD send around abstrat for INCF submission before end of today * FranciscoD mail ML asking all contributors to please comment on the ticket so we can add them as co-authors * FranciscoD fix elephant in F33 * FranciscoD send out logs to list * MeWjOr * MeWjOr file issue upstream, skip tests in spec and continue with snakemake package * MeWjOr generate a list of contributors since our last abstract submission to CNS * **UNASSIGNED** * Everyone: please take up bugs and work on them if you have time to spare People Present (lines said) --------------------------- * FranciscoD (165) * omnidapps (45) * MeWjOr (29) * zodbot (8) * major_ (6) * tg-fedneuro (3) * fm-neuro (1) * iztokf[m] (0) * bt0 (0) * gicmo (0) * achilleas (0) * zbyszek (0) Generated by `MeetBot`_ 0.1.4 .. _`MeetBot`: http://wiki.debian.org/MeetBot -- Thanks, Regards, Ankur Sinha "FranciscoD" (He / Him / His) | https://fedoraproject.org/wiki/User:Ankursinha Time zone: Europe/London

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Next Open NeuroFedora Meeting: 1400 UTC on Monday, 29th March (Today)
by Ankur Sinha 29 Mar '21

29 Mar '21

Hello everyone, (Please note that change in time for today: 1400 UTC instead of 1300 UTC) Please join us at the next Open NeuroFedora team meeting on Monday 29 March (today!) at 1400UTC in #fedora-neuro on IRC (Freenode). The meeting is a public meeting, and open for everyone to attend. You can join us over: IRC: https://webchat.freenode.net/?channels=#fedora-neuro or Matrix/Element: https://matrix.to/#/!xgwUsLNGIoOAXMxGMQ:matrix.org?via=matrix.org&via=t2bot… The channel is also bridged to Telegram, so you can also join us there on the @NeuroFedora group: https://t.me/NeuroFedora You can convert the meeting time to your local time using this command in a terminal: $ date --date='TZ="UTC" 1400 today' or you can use this link: https://www.timeanddate.com/worldclock/fixedtime.html?msg=Open+NeuroFedora+… The meeting will be chaired by @ankursinha. The agenda for the meeting is: - New introductions and roll call. - Tasks from last week's meeting: https://meetbot.fedoraproject.org/teams/neurofedora/neurofedora.2021-03-15-… - Open Pagure tickets: https://pagure.io/neuro-sig/NeuroFedora/issues?status=Open&tags=S%3A+Next+m… - Open bugs check: https://tinyurl.com/neurofedora-bugs - Open package reviews check: https://bugzilla.redhat.com/show_bug.cgi?id=fedora-neuro - Koschei packages check: https://koschei.fedoraproject.org/groups/neuro-sig - CompNeuro lab compose status check for F34/F35: https://koji.fedoraproject.org/koji/packageinfo?packageID=30691 - Neuroscience query of the week - Next meeting day, and chair. - Open floor. We hope to see you there! You can learn more about NeuroFedora here: https://neuro.fedoraproject.org -- Thanks, Regards, Ankur Sinha "FranciscoD" (He / Him / His) | https://fedoraproject.org/wiki/User:Ankursinha Time zone: Europe/London

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Re: Logs from Open NeuroFedora Meeting: 1300 UTC on Monday, 15th March
by Josh Santos 16 Mar '21

16 Mar '21

Hello everyone, Please find the logs for yesterday’s meeting below. We will meet again in 2 weeks. Minutes: https://meetbot.fedoraproject.org/teams/neurofedora/neurofedora.2021-03-15-… Log: https://meetbot.fedoraproject.org/teams/neurofedora/neurofedora.2021-03-15-… Minutes in Text Format: ===================================== #fedora-neuro: NeuroFedora 2021-03-15 ===================================== Meeting started by omnidapps at 13:00:00 UTC. The full logs are available at https://meetbot.fedoraproject.org/fedora-neuro/2021-03-15/neurofedora.2021-… . Meeting summary --------------- * Agenda (omnidapps, 13:03:05) * New introductions and roll call. (omnidapps, 13:03:15) * Tasks from last week's meeting. (omnidapps, 13:03:20) * Open Pagure tickets. (omnidapps, 13:03:25) * Open bugs check. (omnidapps, 13:03:31) * Open package reviews check. (omnidapps, 13:03:36) * Koschei packages check. (omnidapps, 13:04:22) * CompNeuro lab compose status check (omnidapps, 13:04:34) * Neuroscience query of the week (omnidapps, 13:04:44) * Next meeting day, and chair. (omnidapps, 13:04:49) * Open Floor (omnidapps, 13:04:54) * New introductions and roll call (omnidapps, 13:06:32) * Ankur Sinha (FAS: ankursinha, IRC nick: FranciscoD); TZ=UTC; NeuroFedora, Fedora Join, etc. (FranciscoD, 13:07:43) * Iztok Fister Jr. (FAS: iztokf); TZ=UTC+1; NeuroFedora, Python packaging (iztokf[m], 13:09:08) * Josh Santos (FAS: nerdsville, IRC: omnidapps, Telegram: thatnerdjosh); TZ=UTC+7; NeuroFedora volunteer intern, elections, developer, etc. (omnidapps, 13:09:15) * Tasks from last meeting (omnidapps, 13:10:48) * Last meeting minutes are here: https://meetbot.fedoraproject.org/fedora-neuro/2021-03-01/neurofedora.2021-… (omnidapps, 13:11:05) * MeWjOr finish up template migration analysis for pluto migration (omnidapps, 13:14:19) * omnidapps reach out to figure out where help is needed (if any) on pluto migration - WIP (omnidapps, 13:15:05) * omnidapps work on updating matplotlib-scalebar -- Done last week (update from last minutes) (omnidapps, 13:15:34) * FranciscoD ping https://bugzilla.redhat.com/show_bug.cgi?id=1809405 for updates -- Done, seems this package is obsolete, pending word back if we should continue to work on this task (omnidapps, 13:18:22) * LINK: https://pagure.io/fedora-infrastructure/issue/9664 (FranciscoD, 13:19:29) * Koschei not listing neuro-fedora packages https://pagure.io/fedora-infrastructure/issue/9664 -- WIP mizdebsk is on this one (omnidapps, 13:20:14) * LINK: https://pagure.io/fedora-kickstarts/pull-request/759 (omnidapps, 13:20:43) * https://pagure.io/fedora-kickstarts/pull-request/759 -- done (omnidapps, 13:21:28) * ACTION: FranciscoD repackage bluepyopt per https://bugzilla.redhat.com/show_bug.cgi?id=1849706 (omnidapps, 13:27:19) * MeWjOr complete https://bugzilla.redhat.com/show_bug.cgi?id=1821189 : snakemake -- WIP, more deps (omnidapps, 13:28:18) * ACTION: MeWjOr Fix deps for snakemake and proceed with the review. (omnidapps, 13:28:34) * Open Pagure tickets. (omnidapps, 13:28:50) * Tickets marked for discussion: https://pagure.io/neuro-sig/NeuroFedora/issues?status=Open&tags=S%3A+Next+m… (omnidapps, 13:29:16) * LINK: https://pagure.io/neuro-sig/NeuroFedora/issue/427 (omnidapps, 13:30:08) * FranciscoD https://pagure.io/neuro-sig/NeuroFedora/issue/427 -- WIP (omnidapps, 13:31:37) * INCF Assembly: Deadline for abstract submission: 31st March 2021 (FranciscoD, 13:31:54) * Use Pluto instead of Venus: https://pagure.io/neuro-sig/NeuroFedora/issue/421 -- WIP (omnidapps, 13:32:48) * Open bugs check. (omnidapps, 13:33:11) * LINK: https://tinyurl.com/neurofedora-bugs (omnidapps, 13:33:43) * LINK: https://pagure.io/neuro-sig/NeuroFedora/issue/318 (omnidapps, 13:33:51) * LINK: https://bugzilla.redhat.com/show_bug.cgi?id=1926362 (omnidapps, 13:36:21) * LINK: https://bugzilla.redhat.com/show_bug.cgi?id=1926356 (omnidapps, 13:36:28) * let's work on python 3.10 issues when we have time, will be urgent for F35 support https://tinyurl.com/neurofedora-bugs (omnidapps, 13:38:43) * sciunit upgrade should be simple -- FranciscoD to work on this (omnidapps, 13:39:14) * Open package reviews check. (omnidapps, 13:39:36) * LINK: https://bugzilla.redhat.com/show_bug.cgi?id=1809405 (omnidapps, 13:41:25) * Look here at depends on field for all of the in progress package reviews: https://bugzilla.redhat.com/show_bug.cgi?id=fedora-neuro (omnidapps, 13:43:13) * Koschei packages check. (omnidapps, 13:43:40) * Neuro-sig packages on Koschei: https://koschei.fedoraproject.org/groups/neuro-sig (omnidapps, 13:43:47) * see open task to work on fixing our package visibility (omnidapps, 13:44:29) * CompNeuro lab compose status check (omnidapps, 13:44:42) * LINK: https://koji.fedoraproject.org/koji/packageinfo?packageID=30691 (FranciscoD, 13:45:20) * looking good, image builds here https://koji.fedoraproject.org/koji/packageinfo?packageID=30691 (omnidapps, 13:45:37) * Neuroscience query of the week (omnidapps, 13:45:47) * If you find anything interesting, add it to this ticket here: https://pagure.io/neuro-sig/NeuroFedora/issue/318 (omnidapps, 13:45:58) * For those interested in starting with NeuroML: https://docs.neuroml.org/Events/202103-Harmony.html (omnidapps, 13:47:00) * LINK: https://github.com/OCNS/SoftwareWG/discussions/11 (FranciscoD, 13:48:14) * https://github.com/OCNS/SoftwareWG/discussions/11 (omnidapps, 13:48:30) * Next meeting: time/day/chair (omnidapps, 13:48:39) * Next meeting will be chaired by FranciscoD and will occur on 29/03/2021 @13:00 UTC (omnidapps, 13:50:44) * ACTION: FranciscoD to chair next meeting (omnidapps, 13:51:09) * ACTION: omnidapps to send out meeting logs (omnidapps, 13:51:16) * open-floor (omnidapps, 13:51:24) * ACTION: omnidapps send out logs to mailing lists (FranciscoD, 13:53:07) * LINK: https://www.amazon.com/Algorithms-Live-Computer-Science-Decisions/dp/162779… (omnidapps, 13:53:29) Meeting ended at 13:55:42 UTC. Action Items ------------ * FranciscoD repackage bluepyopt per https://bugzilla.redhat.com/show_bug.cgi?id=1849706 * MeWjOr Fix deps for snakemake and proceed with the review. * FranciscoD to chair next meeting * omnidapps to send out meeting logs * omnidapps send out logs to mailing lists Action Items, by person ----------------------- * FranciscoD * FranciscoD repackage bluepyopt per https://bugzilla.redhat.com/show_bug.cgi?id=1849706 * FranciscoD to chair next meeting * omnidapps * omnidapps to send out meeting logs * omnidapps send out logs to mailing lists * **UNASSIGNED** * MeWjOr Fix deps for snakemake and proceed with the review. People Present (lines said) --------------------------- * omnidapps (137) * FranciscoD (77) * zodbot (13) * fm-neuro (9) * iztokf[m] (6) * tg-fedneuro (2) Generated by `MeetBot`_ 0.1.4 .. _`MeetBot`: http://wiki.debian.org/MeetBot Best Regards, Josh Santos

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Next Open NeuroFedora Meeting: 1300 UTC on Monday, 15th March (Today)
by Ankur Sinha 15 Mar '21

15 Mar '21

Hello everyone, Please join us at the next Open NeuroFedora team meeting on Monday 15 March (today!) at 1300UTC in #fedora-neuro on IRC (Freenode). The meeting is a public meeting, and open for everyone to attend. You can join us over: IRC: https://webchat.freenode.net/?channels=#fedora-neuro or Matrix/Element: https://matrix.to/#/!xgwUsLNGIoOAXMxGMQ:matrix.org?via=matrix.org&via=t2bot… The channel is also bridged to Telegram, so you can also join us there on the @NeuroFedora group: https://t.me/NeuroFedora You can convert the meeting time to your local time using this command in a terminal: $ date --date='TZ="UTC" 1300 today' or you can use this link: https://www.timeanddate.com/worldclock/fixedtime.html?msg=Open+NeuroFedora+… The meeting will be chaired by @nerdsville. The agenda for the meeting is: - New introductions and roll call. - Tasks from last week's meeting: https://meetbot.fedoraproject.org/teams/neurofedora/neurofedora.2021-03-01-… - Open Pagure tickets: https://pagure.io/neuro-sig/NeuroFedora/issues?status=Open&tags=S%3A+Next+m… - Open bugs check: https://tinyurl.com/neurofedora-bugs - Open package reviews check: https://bugzilla.redhat.com/show_bug.cgi?id=fedora-neuro - Koschei packages check: https://koschei.fedoraproject.org/groups/neuro-sig - CompNeuro lab compose status check for F34/F35: https://koji.fedoraproject.org/koji/packageinfo?packageID=30691 - Neuroscience query of the week - Next meeting day, and chair. - Open floor. We hope to see you there! You can learn more about NeuroFedora here: https://neuro.fedoraproject.org -- Thanks, Regards, Ankur Sinha "FranciscoD" (He / Him / His) | https://fedoraproject.org/wiki/User:Ankursinha Time zone: Europe/London

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INCF/OCNS Software WG: Dev session on GeNN (9th March)
by Ankur Sinha 04 Mar '21

04 Mar '21

Hello everyone, Apologies for the cross-posts. The INCF/OCNS Software Working Group (WG)[1] is happy to announce the next "Dev session" on GeNN[2] where James Knight and Thomas Nowotny will introduce the software and then discuss its *development* pipeline. The session will be held on March 9 at 1700 UTC. Zoom link: https://universityofsussex.zoom.us/j/97956408800?pwd=by9yVnhCZTJlenY0bVI4OE… The aim of these sessions is to stimulate discussion of the development practices and tools used by different teams to improve the software we use while also improving our knowledge of these practices and tools. We also hope to encourage more users of these tools to contribute to their development to ensure their longevity. The abstract of the session is below: ----- Large-scale numerical simulations of brain circuit models are important for identifying hypotheses on brain functions and testing their consistency and plausibility. Similarly, spiking neural networks are also gaining traction in machine learning with the promise that neuromorphic hardware will eventually make them much more energy efficient than classical ANNs. In this dev session, we will present the GeNN (GPU-enhanced Neuronal Networks) framework [1], which aims to facilitate the use of graphics accelerators for computational models of large-scale spiking neuronal networks to address the challenge of efficient simulations. GeNN is an open source library that generates code to accelerate the execution of network simulations on NVIDIA GPUs through a flexible and extensible interface, which does not require in-depth technical knowledge from the users. GeNN was originally developed as a pure C++ and CUDA library but, subsequently, we have added a Python interface and OpenCL backend. The Python interface has enabled us to develop a PyNN [2] frontend and we are also working on a Keras-inspired frontend for spike-based machine learning [3]. In the session we will briefly cover the history and basic philosophy of GeNN and show some simple examples of how it is used and how it works inside. We will then talk in more depth about its development with a focus on testing for GPU dependent software and some of the further developments such as Brian2GeNN [4]. [1] https://github.com/genn-team/genn [2] https://github.com/genn-team/pynn_genn [3] https://github.com/genn-team/ml_genn [4] https://github.com/brian-team/brian2genn ----- If you develop software for neuroscience, we would love to hear about your development pipeline. Please get in touch with the Software WG either on INCF's Neurostars platform[4] or on our GitHub repository[5]. The WG is a community based group that is open to everyone at all levels of their careers (academic or otherwise). Please introduce yourself to the community on our channels to get involved. [1] https://ocns.github.io/SoftwareWG/pages/about.html [2] http://genn-team.github.io/genn/ [3] https://ocns.github.io/SoftwareWG/2021/02/26/dev-session-james-knight-thoma… [4] https://neurostars.org/t/ocns-infrastructure-software-tools-sig-meet-and-gr… [5] https://github.com/OCNS/SoftwareWG/discussions/12 On behalf of the WG, -- Thanks, Regards, Ankur Sinha (He / Him / His) Research Fellow at the Silver Lab | http://silverlab.org/ Department of Neuroscience, Physiology, & Pharmacology University College London, London, UK Time zone: Europe/London

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Logs from Open NeuroFedora Meeting: 1300 UTC on Monday, 1st March
by Aniket Pradhan 01 Mar '21

01 Mar '21

Hi everyone, Please find the logs from today's meeting below. We will meet again in 2 weeks. Minutes: https://meetbot.fedoraproject.org/fedora-neuro/2021-03-01/neurofedora.2021-… Log: https://meetbot.fedoraproject.org/fedora-neuro/2021-03-01/neurofedora.2021-… Minutes in text format: ===================================== #fedora-neuro: NeuroFedora 2021-03-01 ===================================== Meeting started by MeWjOr at 13:00:55 UTC. The full logs are available at https://meetbot.fedoraproject.org/fedora-neuro/2021-03-01/neurofedora.2021-… . Meeting summary --------------- * Agenda (MeWjOr, 13:03:41) * New introductions and roll call. (MeWjOr, 13:03:48) * Tasks from last week's meeting. (MeWjOr, 13:03:57) * Open Pagure tickets. (MeWjOr, 13:04:02) * Open bugs check. (MeWjOr, 13:04:06) * Open package reviews check. (MeWjOr, 13:04:13) * Koschei packages check. (MeWjOr, 13:04:18) * CompNeuro lab compose status check (MeWjOr, 13:04:23) * Neuroscience query of the week (MeWjOr, 13:04:28) * Next meeting day, and chair. (MeWjOr, 13:04:36) * Open Floor (MeWjOr, 13:04:41) * New introductions and roll call (MeWjOr, 13:05:11) * major/MeWjOr, Aniket Pradhan, (+5:30), random python stuff, packaging... (MeWjOr, 13:06:13) * omnidapps,Josh Santos, (+7:00), update python-matplotlib-scalebar (omnidapps, 13:07:24) * iztokf, Iztok Fister Jr., (+1:00), packaging (iztokf[m], 13:08:48) * Tasks from last meeting (MeWjOr, 13:09:28) * Tasks from the last meeting: https://meetbot.fedoraproject.org/fedora-neuro/2021-02-15/neurofedora.2021-… (MeWjOr, 13:09:44) * omnidapps MeWjOr : look into Venus to ascertain how much work migration from Pluto would be -- work in progress (MeWjOr, 13:11:01) * FranciscoD assign https://bugzilla.redhat.com/show_bug.cgi?id=1922612 to omnidapps -- Done (MeWjOr, 13:12:00) * omnidapps work on updating matplotlib-scalebar -- WIP (MeWjOr, 13:12:23) * FranciscoD ping https://bugzilla.redhat.com/show_bug.cgi?id=1809405 for updates (MeWjOr, 13:15:51) * MeWjOr complete https://bugzilla.redhat.com/show_bug.cgi?id=1821189 : snakemake -- WIP, more deps (MeWjOr, 13:17:24) * LINK: https://pagure.io/fedora-infrastructure/issue/9664 (FranciscoD, 13:18:13) * FranciscoD file a bug with infra about neuro-sig packages not marked in Koschei -- WIP: mizdebsk is looking into it (MeWjOr, 13:18:45) * LINK: https://pagure.io/fedora-kickstarts/pull-request/759 (FranciscoD, 13:19:30) * FranciscoD add python3-pynn to f34+ kickstarts -- Done, https://pagure.io/fedora-kickstarts/pull-request/759 (MeWjOr, 13:20:02) * ACTION: FranciscoD : Package bluepyopt: https://bugzilla.redhat.com/show_bug.cgi?id=1849706 (MeWjOr, 13:22:10) * ACTION: MeWjOr Fix deps for snakemake and proceed with the review. (MeWjOr, 13:22:35) * Open Pagure tickets. (MeWjOr, 13:22:55) * Tickets marked for discussion: https://pagure.io/neuro-sig/NeuroFedora/issues?status=Open&tags=S%3A+Next+m… (MeWjOr, 13:23:03) * NeuroFedora at INCF Neuroinformatics Assembly: https://pagure.io/neuro-sig/NeuroFedora/issue/427 (MeWjOr, 13:23:51) * Use Pluto instead of Venus: https://pagure.io/neuro-sig/NeuroFedora/issue/421 (MeWjOr, 13:25:02) * ACTION: omnidapps work on how to get started with Pluto (MeWjOr, 13:31:41) * ACTION: MeWjOr work on templates to transfer on Pluto (MeWjOr, 13:32:27) * LINK: https://src.fedoraproject.org/rpms/pluto (omnidapps, 13:32:59) * Open bugs check. (MeWjOr, 13:35:02) * NeuroFedora bugs: https://tinyurl.com/neurofedora-bugs (MeWjOr, 13:35:12) * Open package reviews check. (MeWjOr, 13:38:43) * Koschei packages check. (MeWjOr, 13:42:18) * Neuro-sig packages on Koschei: https://koschei.fedoraproject.org/groups/neuro-sig (MeWjOr, 13:42:35) * CompNeuro lab compose status check (MeWjOr, 13:44:02) * The comp neuro lab image task on Koji: https://koji.fedoraproject.org/koji/packageinfo?packageID=30691 (MeWjOr, 13:44:23) * LINK: https://pagure.io/releng/failed-composes/issue/2291 (FranciscoD, 13:45:30) * F34 comp neuro image is building correctly (MeWjOr, 13:47:00) * rawhide comp neuro image failed. Look into it if it continues to fail (MeWjOr, 13:47:53) * LINK: https://www.irccloud.com/pastebin/8cFKjSZg/ (omnidapps, 13:48:51) * rawhide comp neuro image failed. dependency issue. (MeWjOr, 13:48:52) * LINK: https://bugzilla.redhat.com/show_bug.cgi?id=1933615 (FranciscoD, 13:49:54) * Neuroscience query of the week (MeWjOr, 13:51:20) * If you find anything interesting, add it to this ticket here: https://pagure.io/neuro-sig/NeuroFedora/issue/318 (MeWjOr, 13:52:55) * LINK: https://www.incf.org/blog/new-publication-neuroinformatics-members-incf-com… (MeWjOr, 13:54:52) * Next meeting: time/day/chair (MeWjOr, 13:58:55) * ACTION: omnidapps/nerdsville chair the next meeting on 2021/01/15 (MeWjOr, 14:01:34) * ACTION: MeWjOr send out the meeting logs (MeWjOr, 14:01:51) * open-floor (MeWjOr, 14:01:58) Meeting ended at 14:02:48 UTC. Action Items ------------ * FranciscoD : Package bluepyopt: https://bugzilla.redhat.com/show_bug.cgi?id=1849706 * MeWjOr Fix deps for snakemake and proceed with the review. * omnidapps work on how to get started with Pluto * MeWjOr work on templates to transfer on Pluto * omnidapps/nerdsville chair the next meeting on 2021/01/15 * MeWjOr send out the meeting logs Action Items, by person ----------------------- * FranciscoD * FranciscoD : Package bluepyopt: https://bugzilla.redhat.com/show_bug.cgi?id=1849706 * MeWjOr * MeWjOr Fix deps for snakemake and proceed with the review. * MeWjOr work on templates to transfer on Pluto * MeWjOr send out the meeting logs * omnidapps * omnidapps work on how to get started with Pluto * omnidapps/nerdsville chair the next meeting on 2021/01/15 * **UNASSIGNED** * (none) People Present (lines said) --------------------------- * MeWjOr (138) * FranciscoD (68) * omnidapps (46) * zodbot (18) * tg-fedneuro (7) * iztokf[m] (5) * lbazan (4) * fm-stg-neuro_ (3) * fm-neuro (3) * bt0 (0) * rachitt_shah[m] (0) * alciregi (0) * gicmo (0) * achilleas (0) * zbyszek (0) Generated by `MeetBot`_ 0.1.4 .. _`MeetBot`: http://wiki.debian.org/MeetBot -- Thanks Regards Aniket Pradhan http://home.iiitd.edu.in/~aniket17133/ Aliases: MeWjOr/major () ascii ribbon campaign - against html e-mail /\ www.asciiribbon.org - against proprietary attachments

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Next Open NeuroFedora Meeting: 1300 UTC on Monday, 1st March (Today)
by Aniket Pradhan 01 Mar '21

01 Mar '21

Hello everyone, Please join us at the next Open NeuroFedora team meeting on Monday 15 February at 1300UTC in #fedora-neuro on IRC (Freenode). The meeting is a public meeting, and open for everyone to attend. You can join us over: IRC: https://webchat.freenode.net/?channels=#fedora-neuro or Matrix/Element: https://matrix.to/#/!xgwUsLNGIoOAXMxGMQ:matrix.org?via=matrix.org&via=t2bot… The channel is also bridged to Telegram, so you can also join us there on the @NeuroFedora group: https://t.me/NeuroFedora You can convert the meeting time to your local time using this command in a terminal: $ date --date='TZ="UTC" 1300 today' or you can use this link: https://www.timeanddate.com/worldclock/fixedtime.html?msg=Open+NeuroFedora+… The meeting will be chaired by @major (me). The agenda for the meeting is: - New introductions and roll call. - Tasks from last week's meeting: https://meetbot.fedoraproject.org/fedora-neuro/2021-02-15/neurofedora.2021-… - Open Pagure tickets: https://pagure.io/neuro-sig/NeuroFedora/issues?status=Open&tags=S%3A+Next+m… - Open bugs check: https://tinyurl.com/neurofedora-bugs - Open package reviews check: https://bugzilla.redhat.com/show_bug.cgi?id=fedora-neuro - Koschei packages check: https://koschei.fedoraproject.org/groups/neuro-sig - CompNeuro lab compose status check for F33/F34: https://koji.fedoraproject.org/koji/packageinfo?packageID=30691 - Neuroscience query of the week - Next meeting day, and chair. - Open floor. We hope to see you there! You can learn more about NeuroFedora here: https://neuro.fedoraproject.org -- Thanks Regards Aniket Pradhan http://home.iiitd.edu.in/~aniket17133/ Aliases: MeWjOr/major () ascii ribbon campaign - against html e-mail /\ www.asciiribbon.org - against proprietary attachments

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Neurofedora March 2021