This is just a heads-up about packaging of Bioconductor. Currently
Pierre-Yves is spearheading the packaging of Bioconductor, and I'm
helping out with reviews. Initially Pierre started with the unstable
(will be 2.2):
http://www.bioconductor.org/packages/2.2/bioc/
but that's a moving target and won't be officially released until 2008
and is targeting R 3.0 (?) so we dropped back to the stable (2.1)
release:
http://www.bioconductor.org/packages/2.1/bioc/
Unfortunately a couple of packages (R-tkWidgets and some others) from
2.2 have already made their way into Fedora, but they are only at most
1 or 2 minor releases away from 2.1, so in discussion with Tom
Callaway and Pierre-Yves on #fedora-devel, we decided to stick with
those packages but use only 2.1 releases for everything else. Once
2.2 is released we can update all packages to that then.
I'm currently working on the review of R-Biobase, the core package:
https://bugzilla.redhat.com/show_bug.cgi?id=240500
We could perhaps also create a tracker bug and make all Bioconductor
module package reviews block the tracker bug. If anybody would like
to help, let us know!
Cheers,
Alex
hi,
In an effort to help the biolinux community
www.biolinux.org ,
I put at your disposition
R-BioC for R 2.5.x for fedora core 6.
Comments for improvement will be welcome.
It is not an official fedora rpm because fedora plans to support only
R.
Unfortunatly is the only fc6 rpm for now but they are more for
previous fc
It works well, and it contains 102 very usefull sources:
abind
adSplit
affxparser
affy
affycomp
affydata
affyio
affylmGUI
affypdnn
affyPLM
annaffy
annotate
arrayMagic
Biobase
bioDist
Biostrings
Bolstad
BufferedMatrix
BufferedMatrixMethods
Category
cMAP
cyp450cdf
DBI
DynDoc
ellipse
gcrma
genefilter
GeneMeta
geneplotter
GeneR
GGtools
globaltest
GO
GOstats
goTools
gp53cdf
gpls
graph
hgfocus
hgfocuscdf
hgfocusprobe
hgu133a
hgu133acdf
hgu133aprobe
hgu95av2
hgu95av2cdf
hgu95av2probe
Icens
IDPmisc
impute
KEGG
limma
limmaGUI
maanova
makecdfenv
marray
matchprobes
Matrix
mgu74av2
mgu74av2cdf
mgu74av2probe
multtest
pamr
PFAM
pvclust
R2HTML
RankProd
RBGL
R-BioC.sh
R.cache
RColorBrewer
RCurl
Rdbi
RdbiPgSQL
reposTools
Rgraphviz
R.huge
RMySQL
ROC
R.oo
RSPerl
RSPython
RSQLite
RSvgDevice
RSVGTipsDevice
RUnit
R.utils
samr
scatterplot3d
siggenes
sma
som
SparseM
statmod
tkrplot
tkWidgets
VR
vsn
widgetTools
XML
xtable
YEAST
Best regards and good work.
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