r-devel March 2008

r-devel@lists.fedoraproject.org

1 participants
2 discussions

Bioconductor in Fedora
by Alex Lancaster 28 Jul '08

28 Jul '08

This is just a heads-up about packaging of Bioconductor. Currently Pierre-Yves is spearheading the packaging of Bioconductor, and I'm helping out with reviews. Initially Pierre started with the unstable (will be 2.2): http://www.bioconductor.org/packages/2.2/bioc/ but that's a moving target and won't be officially released until 2008 and is targeting R 3.0 (?) so we dropped back to the stable (2.1) release: http://www.bioconductor.org/packages/2.1/bioc/ Unfortunately a couple of packages (R-tkWidgets and some others) from 2.2 have already made their way into Fedora, but they are only at most 1 or 2 minor releases away from 2.1, so in discussion with Tom Callaway and Pierre-Yves on #fedora-devel, we decided to stick with those packages but use only 2.1 releases for everything else. Once 2.2 is released we can update all packages to that then. I'm currently working on the review of R-Biobase, the core package: https://bugzilla.redhat.com/show_bug.cgi?id=240500 We could perhaps also create a tracker bug and make all Bioconductor module package reviews block the tracker bug. If anybody would like to help, let us know! Cheers, Alex

2 2

R 2.6.2 on F-7 and F-8
by Tom Callaway 12 Mar '08

12 Mar '08

I just did testing updates for R 2.6.2 (and a rpy rebuild to match) for F-7 and F-8. Please test them out and give the updates positive karma if they work: https://admin.fedoraproject.org/updates/F7/pending/rpy-0.4.6-24.fc7,R-2.6.2… https://admin.fedoraproject.org/updates/F8/pending/rpy-1.0.1-3.fc8,R-2.6.2-… Thanks, ~spot

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r-devel March 2008